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    cd2bp2 CD2 (cytoplasmic tail) binding protein 2 [ Danio rerio (zebrafish) ]

    Gene ID: 393936, updated on 9-Dec-2024

    Summary

    Official Symbol
    cd2bp2provided by ZNC
    Official Full Name
    CD2 (cytoplasmic tail) binding protein 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-925
    See related
    Ensembl:ENSDARG00000027357 AllianceGenome:ZFIN:ZDB-GENE-040426-925
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:56165
    Summary
    Predicted to be part of U5 snRNP. Orthologous to human CD2BP2 (CD2 cytoplasmic tail binding protein 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See cd2bp2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (32832546..32842383)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (32700832..32710669)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene myosin light chain, phosphorylatable, fast skeletal muscle a Neighboring gene PH domain containing endocytic trafficking adaptor 2 Neighboring gene proline rich 14 Neighboring gene si:dkey-16l2.20 Neighboring gene RUS family member 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Pathways from PubChem

    General protein information

    Preferred Names
    CD2 antigen cytoplasmic tail-binding protein 2
    Names
    CD2 antigen (cytoplasmic tail) binding protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200961.1NP_957255.1  CD2 antigen cytoplasmic tail-binding protein 2

      See identical proteins and their annotated locations for NP_957255.1

      Status: PROVISIONAL

      Source sequence(s)
      BC045960
      UniProtKB/TrEMBL
      Q7ZV87
      Related
      ENSDARP00000033455.4, ENSDART00000035759.6
      Conserved Domains (1) summary
      pfam02213
      Location:319374
      GYF; GYF domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      32832546..32842383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394535.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      313633..323470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395227.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      192996..202710
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)