U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    nrgna neurogranin (protein kinase C substrate, RC3) a [ Danio rerio (zebrafish) ]

    Gene ID: 567608, updated on 9-Dec-2024

    Summary

    Official Symbol
    nrgnaprovided by ZNC
    Official Full Name
    neurogranin (protein kinase C substrate, RC3) aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090710-4
    See related
    Ensembl:ENSDARG00000039626 AllianceGenome:ZFIN:ZDB-GENE-090710-4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    nrgn; wu:fk30d11
    Summary
    Predicted to be located in membrane. Is expressed in forebrain and hindbrain. Orthologous to human NRGN (neurogranin). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See nrgna in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (58372164..58382661)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (57702156..57712653)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137495642 Neighboring gene uncharacterized LOC137495643 Neighboring gene hepatic and glial cell adhesion molecule b Neighboring gene coiled-coil domain containing 15

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    neurogranin (protein kinase C substrate, RC3) a

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001302620.1NP_001289549.1  neurogranin (protein kinase C substrate, RC3) a

      Status: VALIDATED

      Source sequence(s)
      EH437598, EH450061, EH462721, FJ392628
      UniProtKB/TrEMBL
      A0A8M1P133, F6NQC4
      Related
      ENSDARP00000057909.3, ENSDART00000057910.5
      Conserved Domains (1) summary
      smart00015
      Location:2747
      IQ; Calmodulin-binding motif

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      58372164..58382661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)