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    ppt2a.3 palmitoyl-protein thioesterase 2a, tandem duplicate 3 [ Danio rerio (zebrafish) ]

    Gene ID: 406830, updated on 9-Dec-2024

    Summary

    Official Symbol
    ppt2a.3provided by ZNC
    Official Full Name
    palmitoyl-protein thioesterase 2a, tandem duplicate 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2909
    See related
    Ensembl:ENSDARG00000014208 AllianceGenome:ZFIN:ZDB-GENE-040426-2909
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:55413; wu:fc23c11; wu:fi06h07
    Summary
    Predicted to enable palmitoyl-(protein) hydrolase activity. Predicted to be active in extracellular region and lysosome. Orthologous to human PPT2 (palmitoyl-protein thioesterase 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See ppt2a.3 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (35102458..35112949, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (35244489..35254980, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene rho guanine nucleotide exchange factor 28 Neighboring gene tektin like 1 Neighboring gene sestrin 3 Neighboring gene biogenesis of lysosomal organelles complex-1, subunit 3 Neighboring gene palmitoyl-protein thioesterase 2a, tandem duplicate 4 Neighboring gene uncharacterized LOC103908855 Neighboring gene solute carrier family 19 member 3a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables palmitoyl-(protein) hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in extracellular region IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in lysosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC406830

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001309531.1NP_001296460.1  uncharacterized protein LOC406830 precursor

      Status: VALIDATED

      Source sequence(s)
      CR387932, EH491109
      UniProtKB/TrEMBL
      A0A8M1P7P7, E7FC96
      Related
      ENSDARP00000090416.3, ENSDART00000099642.3
      Conserved Domains (1) summary
      cl21494
      Location:27260
      Abhydrolase; alpha/beta hydrolases

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      35102458..35112949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_011006333.1 RNA Sequence

      Related
      ENSDART00000154565.3
    2. XR_011006334.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_213509.1: Suppressed sequence

      Description
      NM_213509.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.