zgc:66483 zgc:66483 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:66483provided by ZNC
Official Full Name: zgc:66483provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-5765
See related: Ensembl:ENSDARG00000099612 AllianceGenome:ZFIN:ZDB-GENE-030131-5765
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fi17b06; wu:fi17b06
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in spinal cord. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 21

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (2313735..2322102, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (2290131..2296387, complement)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC327554

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199825.2 → NP_956119.2 uncharacterized protein LOC327554

Status: VALIDATED

Source sequence(s)

BX890539, EH537739

UniProtKB/TrEMBL

A0A8M6YWW6, B8A5Z1

Related

ENSDARP00000137989.1, ENSDART00000162867.2

Conserved Domains (3) summary

COG5048
Location:15 → 221

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:154 → 174

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam13465
Location:194 → 219

zf-H2C2_2; Zinc-finger double domain