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    ubl7b ubiquitin-like 7b (bone marrow stromal cell-derived) [ Danio rerio (zebrafish) ]

    Gene ID: 393331, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ubl7bprovided by ZNC
    Official Full Name
    ubiquitin-like 7b (bone marrow stromal cell-derived)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1334
    See related
    Ensembl:ENSDARG00000040286 AllianceGenome:ZFIN:ZDB-GENE-040426-1334
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ubl7; zgc:64009
    Summary
    Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol. Orthologous to human UBL7 (ubiquitin like 7). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See ubl7b in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (50524010..50532549)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (50527504..50535984)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene inhibitory synaptic factor 1 Neighboring gene CD276 molecule Neighboring gene uncharacterized LOC101884348 Neighboring gene uncharacterized LOC137488347 Neighboring gene ubiquitin-conjugating enzyme E2Q family member 1 Neighboring gene cholinergic receptor, nicotinic, beta 4 (neuronal) Neighboring gene cholinergic receptor, nicotinic, alpha 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Null cyp1b1 Activity in Zebrafish Leads to Variable Craniofacial Defects Associated with Altered Expression of Extracellular Matrix and Lipid Metabolism Genes. Alexandre-Moreno S, et al. Int J Mol Sci, 2021 Jun 16. PMID 34208498, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC64009

    General protein information

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    Preferred Names
    ubiquitin-like protein 7b
    Names
    ubiquitin-like 7
    ubl7a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200360.1 → NP_956654.1  ubiquitin-like protein 7b

      See identical proteins and their annotated locations for NP_956654.1

      Status: PROVISIONAL

      Source sequence(s)
      BC053194
      UniProtKB/TrEMBL
      A0A286Y9R0, A0A8M2BLB6, B2GP34, Q7T3A5
      Related
      ENSDARP00000089161.4, ENSDART00000098390.5
      Conserved Domains (3) summary
      cd01815
      Location:15 → 89
      BMSC_UbP_N; Ubiquitin-like domain of BMSC-UbP
      cd14326
      Location:324 → 361
      UBA_UBL7; UBA domain found in ubiquitin-like protein 7 (UBL7) and similar proteins
      pfam06112
      Location:232 → 300
      Herpes_capsid; Gammaherpesvirus capsid protein

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      50524010..50532549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068214734.1 → XP_068070835.1  ubiquitin-like protein 7b isoform X1

      UniProtKB/TrEMBL
      A0A286Y9R0, A0A8M2BLB6, B2GP34, Q7T3A5

    2. XM_068214735.1 → XP_068070836.1  ubiquitin-like protein 7b isoform X2

      UniProtKB/TrEMBL
      A0A8M2BKY3, A0A8M2BLB6

    3. XM_005173686.5 → XP_005173743.1  ubiquitin-like protein 7b isoform X2

      UniProtKB/TrEMBL
      A0A8M2BKY3, A0A8M2BLB6
      Related
      ENSDART00000150927.3
      Conserved Domains (3) summary
      cd01815
      Location:15 → 89
      BMSC_UbP_N; Ubiquitin-like domain of BMSC-UbP
      cd14326
      Location:323 → 360
      UBA_UBL7; UBA domain found in ubiquitin-like protein 7 (UBL7) and similar proteins
      pfam06112
      Location:232 → 300
      Herpes_capsid; Gammaherpesvirus capsid protein
    Nucleotide Protein
    Heading Accession and Version

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