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    psip1b PC4 and SFRS1 interacting protein 1b [ Danio rerio (zebrafish) ]

    Gene ID: 407619, updated on 9-Dec-2024

    Summary

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    Official Symbol
    psip1bprovided by ZNC
    Official Full Name
    PC4 and SFRS1 interacting protein 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3273
    See related
    Ensembl:ENSDARG00000077405 AllianceGenome:ZFIN:ZDB-GENE-030131-3273
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc32f04; wu:fc32f04; si:ch211-116m6.3
    Summary
    Predicted to be involved in chromatin remodeling. Predicted to be active in nucleus. Orthologous to human PSIP1 (PC4 and SRSF1 interacting protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See psip1b in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (45200342..45225861)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (45486969..45512541)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein basonuclin-2 Neighboring gene coiled-coil domain containing 171 Neighboring gene tetratricopeptide repeat domain 39B Neighboring gene complement factor I

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    PC4 and SFRS1 interacting protein 1b; axoneme-associated protein mst101(2)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      45200342..45225861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021470060.2 → XP_021325735.1  axoneme-associated protein mst101(2)

      UniProtKB/TrEMBL
      A0A8M9PTS2, A0A8M9PX56
      Related
      ENSDARP00000010777.8, ENSDART00000004357.8
      Conserved Domains (3) summary
      cd05834
      Location:14 → 93
      HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
      pfam11467
      Location:1440 → 1534
      LEDGF; Lens epithelium-derived growth factor (LEDGF)
      cl26511
      Location:586 → 1321
      Neuromodulin_N; Gap junction protein N-terminal region
    Nucleotide Protein Strain
    Heading Accession and Version

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