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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814804, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT2G02750
    Locus tag
    AT2G02750
    See related
    Araport:AT2G02750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20F6.11; T20F6_11
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (771151..773552, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene PAS/LOV protein B Neighboring gene Pectate lyase family protein Neighboring gene ncRNA Neighboring gene GRIP/coiled-coil protein, putative (DUF1664) Neighboring gene ssDNA-binding transcriptional regulator Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ubiquiting-conjugating enzyme 2 Neighboring gene L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase Neighboring gene 4'-phosphopantetheinyl transferase domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_126330.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_178378.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 42683 Blast hits to 13925 proteins in 241 species: Archae - 0; Bacteria - 4; Metazoa - 114; Fungi - 172; Plants - 41670; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      771151..773552 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126330.3 → NP_178378.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178378.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MEI0, O64507, Q1PFA6
      UniProtKB/TrEMBL
      A0A178VWB3
      Conserved Domains (5) summary
      TIGR00756
      Location:299 → 333
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:438 → 465
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:437 → 467
      PPR; PPR repeat
      pfam12854
      Location:327 → 359
      PPR_1; PPR repeat
      pfam13041
      Location:297 → 345
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PFA6.2

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