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    JAL23 jacalin-related lectin 23 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818518, updated on 18-Sep-2024

    Summary

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    Official Symbol
    JAL23
    Official Full Name
    jacalin-related lectin 23
    Primary source
    TAIR:AT2G39330
    Locus tag
    AT2G39330
    See related
    Araport:AT2G39330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    jacalin-related lectin 23; T16B24.3; T16B24_3
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    Genomic context

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    See JAL23 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (16419483..16422158, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene jacalin-related lectin 22 Neighboring gene Cysteine proteinases superfamily protein Neighboring gene SAC3/GANP/Nin1/mts3/eIF-3 p25 family Neighboring gene ncRNA Neighboring gene ABC-2 type transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Post-transcriptional control of GRF transcription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity. Debernardi JM, et al. Plant J, 2014 Aug. PMID 24888433
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001336766.1
    NM_001336767.1
    NM_129490.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    jacalin-related lectin 23
    NP_001318382.1
    • jacalin-related lectin 23 (JAL23); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin-related lectin 22 (TAIR:AT2G39310.3); Has 1977 Blast hits to 736 proteins in 44 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 4; Plants - 1953; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16419483..16422158 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336766.1 → NP_001318382.1  jacalin-related lectin 23 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80948, Q8W4Q6
      UniProtKB/TrEMBL
      A0A178VSZ1, A0A5S9X5C7, A0A654F1J0
      Conserved Domains (1) summary
      pfam01419
      Location:323 → 454
      Jacalin; Jacalin-like lectin domain

    2. NM_001336767.1 → NP_001323546.1  jacalin-related lectin 23 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VSZ1, A0A1P8AXC4, A0A5S9X5C7, A0A654F1J0

    3. NM_129490.4 → NP_181465.1  jacalin-related lectin 23 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181465.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80948, Q8W4Q6
      UniProtKB/TrEMBL
      A0A178VSZ1, A0A5S9X5C7, A0A654F1J0
      Conserved Domains (1) summary
      pfam01419
      Location:323 → 454
      Jacalin; Jacalin-like lectin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80948.1

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