TRIGALACTOSYLDIACYLGLYCEROL-like protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: TRIGALACTOSYLDIACYLGLYCEROL-like protein
Primary source: TAIR:AT2G44640
Locus tag: AT2G44640
See related: Araport:AT2G44640
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F16B22.13
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 5

Sequence:: Chromosome: 2; NC_003071.7 (18417243..18419396)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

A function of atLPTD1 in the transport of lipids from endoplasmic reticulum to chloroplast under phosphate starvation, which is combinatory with the function of TGD4, is reported.[LPTD1]
Title: The plastid outer membrane localized LPTD1 is important for glycerolipid remodelling under phosphate starvation.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_130028.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables phosphatidic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in ER to chloroplast lipid transport	IEA Inferred from Electronic Annotation more info
involved_in acylglycerol transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in chloroplast envelope	HDA more info	PubMed
located_in cytosol	HDA more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info
located_in plant-type vacuole	HDA more info	PubMed
located_in plastid	HDA more info	PubMed

General protein information

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Preferred Names: TRIGALACTOSYLDIACYLGLYCEROL-like protein

NP_566021.1

FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3769 (InterPro:IPR022244); BEST Arabidopsis thaliana protein match is: pigment defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

18417243..18419396

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_130028.3 → NP_566021.1 TRIGALACTOSYLDIACYLGLYCEROL-like protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_566021.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VX46, O80503, Q94A95

Conserved Domains (1) summary

pfam12600
Location:163 → 451

DUF3769; Protein of unknown function (DUF3769)