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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817517, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT2G29670
    Locus tag
    AT2G29670
    See related
    Araport:AT2G29670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27A16.23; T27A16_23
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (12681831..12685151, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene zinc finger (C2H2 type) family protein Neighboring gene uncharacterized protein Neighboring gene cell division control 6 Neighboring gene anthranilate synthase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response. Carianopol CS, et al. Commun Biol, 2020 Mar 26. PMID 32218501, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001336221.1
    NM_128521.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_565685.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G07280.3); Has 535 Blast hits to 340 proteins in 62 species: Archae - 10; Bacteria - 119; Metazoa - 2; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12681831..12685151 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128521.5 → NP_565685.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565685.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVG6, A0A384KNZ5, O82388, Q8GW79, Q94JQ2
      Conserved Domains (3) summary
      COG0457
      Location:379 → 516
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:435 → 464
      TPR; TPR repeat [structural motif]
      pfam14559
      Location:449 → 513
      TPR_19; Tetratricopeptide repeat

    2. NM_001336221.1 → NP_001325269.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVG6, A0A384KNZ5, O82388, Q8GW79, Q94JQ2
      Conserved Domains (3) summary
      COG0457
      Location:379 → 516
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:435 → 464
      TPR; TPR repeat [structural motif]
      pfam14559
      Location:449 → 513
      TPR_19; Tetratricopeptide repeat
    Nucleotide Protein
    Heading Accession and Version

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