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    GIK Putative AT-hook DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818094, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GIK
    Official Full Name
    Putative AT-hook DNA-binding family protein
    Primary source
    TAIR:AT2G35270
    Locus tag
    AT2G35270
    See related
    Araport:AT2G35270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AHL21; AT-hook motif nuclear localized protein 21; GIANT KILLER; T4C15.6; T4C15_6
    Summary
    Direct target of AGAMOUS. Regulates patterning and differentiation of reproductive organs.
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    Genomic context

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    See GIK in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (14856664..14858134)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene NEP-interacting protein, putative (DUF239) Neighboring gene CAAX protease self-immunity protein Neighboring gene F-box family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AGAMOUS controls GIANT KILLER, a multifunctional chromatin modifier in reproductive organ patterning and differentiation. Ng KH, et al. PLoS Biol, 2009 Nov. PMID 19956801, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. GIANT KILLER (AT2G35270) acts as a molecular node downstream of AGAMOUS, regulating patterning and differentiation of reproductive organs through chromatin organization
      Title: AGAMOUS controls GIANT KILLER, a multifunctional chromatin modifier in reproductive organ patterning and differentiation.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_129079.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables minor groove of adenine-thymine-rich DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables minor groove of adenine-thymine-rich DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within anther development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within carpel development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Putative AT-hook DNA-binding family protein
    NP_181070.1
    • GIANT KILLER (GIK); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT4G17800.1); Has 1072 Blast hits to 1056 proteins in 125 species: Archae - 2; Bacteria - 116; Metazoa - 122; Fungi - 9; Plants - 786; Viruses - 5; Other Eukaryotes - 32 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14856664..14858134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129079.2 → NP_181070.1  Putative AT-hook DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181070.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82166
      UniProtKB/TrEMBL
      A0A178VUY5, A0A5S9X4M7, A0A654EZ16
      Conserved Domains (1) summary
      pfam03479
      Location:108 → 219
      DUF296; Domain of unknown function (DUF296)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82166.1

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