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    Glycosyl hydrolase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815957, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Glycosyl hydrolase superfamily protein
    Primary source
    TAIR:AT2G14690
    Locus tag
    AT2G14690
    See related
    Araport:AT2G14690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATXYN4; T6B13.7; T6B13_7
    Summary
    Encodes a putative glycosyl hydrolase family 10 protein (xylanase).
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (6283801..6286055, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene sucrose-proton symporter 8 Neighboring gene myosin heavy chain-like protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A xylanase, AtXyn1, is predominantly expressed in vascular bundles, and four putative xylanase genes were identified in the Arabidopsis thaliana genome. Suzuki M, et al. Plant Cell Physiol, 2002 Jul. PMID 12154138
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_127033.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables endo-1,4-beta-xylanase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in xylan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Glycosyl hydrolase superfamily protein
    NP_179076.3
    • Glycosyl hydrolase superfamily protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT4G33820.1); Has 1960 Blast hits to 1953 proteins in 427 species: Archae - 8; Bacteria - 1140; Metazoa - 20; Fungi - 345; Plants - 268; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      6283801..6286055 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127033.4 → NP_179076.3  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179076.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q680B7, Q6NQ91, Q9ZVK8
      UniProtKB/TrEMBL
      A0A178VRY1, A0A5S9WYC9
      Conserved Domains (1) summary
      smart00633
      Location:241 → 491
      Glyco_10; Glycosyl hydrolase family 10
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q680B7.1

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