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    emb2410 embryo defective 2410 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817107, updated on 18-Sep-2024

    Summary

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    Official Symbol
    emb2410
    Official Full Name
    embryo defective 2410
    Primary source
    TAIR:AT2G25660
    Locus tag
    AT2G25660
    See related
    Araport:AT2G25660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo defective 2410; F3N11.11; F3N11_11
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    Genomic context

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    See emb2410 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    25
    Sequence:
    Chromosome: 2; NC_003071.7 (10915307..10927702, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene beta glucosidase 14 Neighboring gene SPOC domain / Transcription elongation factor S-II protein Neighboring gene DNA-binding storekeeper protein-related transcriptional regulator Neighboring gene uncharacterized protein Neighboring gene molybdate transporter 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TIC236 gain-of-function mutations unveil the link between plastid division and plastid protein import. Fang J, et al. Proc Natl Acad Sci U S A, 2022 Mar 15. PMID 35275795, Free PMC Article
    2. TIC236 links the outer and inner membrane translocons of the chloroplast. Chen YL, et al. Nature, 2018 Dec. PMID 30464337
    3. Maize defective kernel5 is a bacterial TamB homologue required for chloroplast envelope biogenesis. Zhang J, et al. J Cell Biol, 2019 Aug 5. PMID 31235479, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_128125.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    involved_in protein secretion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast inner membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    embryo defective 2410
    NP_180137.3
    • embryo defective 2410 (emb2410); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF490 (InterPro:IPR007452); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10915307..10927702 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336008.1 → NP_001324009.1  embryo defective 2410 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYW3, A0A5S9X193, A0A654EXQ2
      Conserved Domains (1) summary
      pfam04357
      Location:1744 → 2139
      TamB; inner membrane protein subunit of TAM complex

    2. NM_001336007.1 → NP_001324008.1  embryo defective 2410 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYW3, A0A5S9X193, A0A654EXQ2
      Conserved Domains (1) summary
      pfam04357
      Location:1744 → 2139
      TamB; inner membrane protein subunit of TAM complex

    3. NM_001336009.1 → NP_001324007.1  embryo defective 2410 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4ISL7, Q9SL97
      UniProtKB/TrEMBL
      A0A5S9X193
      Conserved Domains (1) summary
      pfam04357
      Location:1755 → 2150
      TamB; inner membrane protein subunit of TAM complex

    4. NM_128125.3 → NP_180137.3  embryo defective 2410 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180137.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4ISL7, Q9SL97
      UniProtKB/TrEMBL
      A0A5S9X193
      Conserved Domains (1) summary
      pfam04357
      Location:1755 → 2150
      TamB; inner membrane protein subunit of TAM complex
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4ISL7.1

    Gene LinkOut

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