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    Modifier of rudimentary (Mod(r)) protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818240, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Modifier of rudimentary (Mod(r)) protein
    Primary source
    TAIR:AT2G36680
    Locus tag
    AT2G36680
    See related
    Araport:AT2G36680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13K3.8; F13K3_8; VPS37-2
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (15368792..15371033, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CHUP1-like protein Neighboring gene poly(A) binding protein 7 Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis ESCRT protein-protein interaction network. Shahriari M, et al. Plant Mol Biol, 2011 May. PMID 21442383
    2. The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. Spitzer C, et al. Development, 2006 Dec. PMID 17090720
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036418.2
    NM_001084544.2
    NM_179937.4
    NM_179938.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of ESCRT I complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Modifier of rudimentary (Mod(r)) protein
    NP_001031495.1
    • Modifier of rudimentary (Mod(r)) protein; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: Modifier of rudimentary (Mod(r)) protein (TAIR:AT3G53120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001078013.1
    • Modifier of rudimentary (Mod(r)) protein; LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: Modifier of rudimentary (Mod(r)) protein (TAIR:AT3G53120.1); Has 81 Blast hits to 81 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    NP_850268.2
    • Modifier of rudimentary (Mod(r)) protein; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: Modifier of rudimentary (Mod(r)) protein (TAIR:AT3G53120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_850269.2
    • Modifier of rudimentary (Mod(r)) protein; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: Modifier of rudimentary (Mod(r)) protein (TAIR:AT3G53120.1); Has 73 Blast hits to 73 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15368792..15371033 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179937.4 → NP_850268.2  Modifier of rudimentary (Mod(r)) protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850268.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3EBL9, Q8VYK5, Q9ZQA6
      UniProtKB/TrEMBL
      A0A178VWM6, A0A5S9X530, A0A654EZG6
      Conserved Domains (2) summary
      pfam07200
      Location:63 → 206
      Mod_r; Modifier of rudimentary (Mod(r)) protein
      cl40450
      Location:10 → 53
      KLF8_12_N; N-terminal domain of Kruppel-like factor (KLF) 8, KLF12, and similar proteins

    2. NM_001036418.2 → NP_001031495.1  Modifier of rudimentary (Mod(r)) protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031495.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3EBL9
      Conserved Domains (1) summary
      pfam07200
      Location:63 → 143
      Mod_r; Modifier of rudimentary (Mod(r)) protein

    3. NM_179938.2 → NP_850269.2  Modifier of rudimentary (Mod(r)) protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850269.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3EBL9
      Conserved Domains (1) summary
      pfam07200
      Location:63 → 124
      Mod_r; Modifier of rudimentary (Mod(r)) protein

    4. NM_001084544.2 → NP_001078013.1  Modifier of rudimentary (Mod(r)) protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078013.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3EBL9
      Conserved Domains (1) summary
      pfam07200
      Location:63 → 143
      Mod_r; Modifier of rudimentary (Mod(r)) protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3EBL9.1

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