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    OBP32pep, putative (DUF220) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838966, updated on 18-Sep-2024

    Summary

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    Official Full Name
    OBP32pep, putative (DUF220)
    Primary source
    TAIR:AT1G23560
    Locus tag
    AT1G23560
    See related
    Araport:AT1G23560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28C11.32
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (8352615..8354619, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene hypothetical protein (DUF220) Neighboring gene transmembrane protein, putative (Domain of unknown function DUF220)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001332609.1
    NM_102205.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    OBP32pep, putative (DUF220)
    NP_564197.1
    • Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF220) (TAIR:AT1G70480.2); Has 154 Blast hits to 140 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8352615..8354619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102205.1 → NP_564197.1  OBP32pep, putative (DUF220) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564197.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VNR9, Q8LCB8, Q9ZUD8
      Conserved Domains (1) summary
      pfam02713
      Location:169 → 240
      DUF220; Domain of unknown function DUF220

    2. NM_001332609.1 → NP_001320352.1  OBP32pep, putative (DUF220) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VNR9, Q8LCB8, Q9ZUD8
      Conserved Domains (1) summary
      pfam02713
      Location:169 → 240
      DUF220; Domain of unknown function DUF220
    Nucleotide Protein
    Heading Accession and Version

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