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    SBP (S-ribonuclease binding protein) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842355, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SBP (S-ribonuclease binding protein) family protein
    Primary source
    TAIR:AT1G60610
    Locus tag
    AT1G60610
    See related
    Araport:AT1G60610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8A5.13; F8A5_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (22327792..22330318, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene UbiA prenyltransferase family protein Neighboring gene RNA polymerase I subunit 43 Neighboring gene RALF-like 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001124047.2
    NM_001333899.1
    NM_001333900.1
    NM_104744.4
    NM_202326.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SBP (S-ribonuclease binding protein) family protein
    NP_001117519.1
    • SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G10650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_176260.1
    • SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G10650.1); Has 801 Blast hits to 795 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 4; Plants - 348; Viruses - 29; Other Eukaryotes - 104 (source: NCBI BLink).
    NP_974055.1
    • SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G10650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22327792..22330318 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104744.4 → NP_176260.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176260.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E293, Q4TU35
      Conserved Domains (1) summary
      pfam13920
      Location:293 → 334
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    2. NM_001124047.2 → NP_001117519.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117519.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E293, Q4TU35
      Conserved Domains (1) summary
      pfam13920
      Location:293 → 334
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    3. NM_001333899.1 → NP_001322161.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E293, Q4TU35

    4. NM_001333900.1 → NP_001322160.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E293, Q4TU35

    5. NM_202326.3 → NP_974055.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974055.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E293, Q4TU35
      Conserved Domains (1) summary
      pfam13920
      Location:293 → 334
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    Nucleotide Protein
    Heading Accession and Version

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