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    EDA16 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842407, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EDA16
    Official Full Name
    SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
    Primary source
    TAIR:AT1G61140
    Locus tag
    AT1G61140
    See related
    Araport:AT1G61140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo sac development arrest 16; F11P17.13; F11P17_13; FRG4; SNF2-RING-HELICASE?LIKE 4
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    Genomic context

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    See EDA16 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (22534663..22540933, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene terpene synthase 04 Neighboring gene serine carboxypeptidase-like 32 Neighboring gene LisH and RanBPM domains containing protein Neighboring gene retrotransposon gag Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Immunity onset alters plant chromatin and utilizes EDA16 to regulate oxidative homeostasis. Pardal AJ, et al. PLoS Pathog, 2021 May. PMID 34015058, Free PMC Article
    2. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Immunity onset alters plant chromatin and utilizes EDA16 to regulate oxidative homeostasis.
      Title: Immunity onset alters plant chromatin and utilizes EDA16 to regulate oxidative homeostasis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001124052.2
    NM_001124053.2
    NM_104795.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo sac development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
    NP_001117524.1
    • embryo sac development arrest 16 (EDA16); FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001117525.1
    • embryo sac development arrest 16 (EDA16); FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_176309.2
    • embryo sac development arrest 16 (EDA16); FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22534663..22540933 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104795.4 → NP_176309.2  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176309.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EVP5, F4HTG1
      Conserved Domains (3) summary
      pfam00176
      Location:559 → 958
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:1124 → 1220
      Helicase_C; Helicase conserved C-terminal domain
      pfam13923
      Location:986 → 1023
      zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)

    2. NM_001124053.2 → NP_001117525.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117525.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EVP5, B3H7J3
      Conserved Domains (3) summary
      pfam00176
      Location:401 → 800
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:966 → 1062
      Helicase_C; Helicase conserved C-terminal domain
      pfam13923
      Location:828 → 865
      zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)

    3. NM_001124052.2 → NP_001117524.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117524.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H7C1
      Conserved Domains (1) summary
      pfam00176
      Location:566 → 965
      SNF2_N; SNF2 family N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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