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    Carbohydrate-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837552, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Carbohydrate-binding protein
    Primary source
    TAIR:AT1G10150
    Locus tag
    AT1G10150
    See related
    Araport:AT1G10150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATPP2-A10; F14N23.3; F14N23_3; phloem protein 2-A10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (3325799..3327614)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene endoplasmic reticulum-type calcium-transporting ATPase 3 Neighboring gene Uncharacterized conserved protein UCP031279 Neighboring gene phloem protein 2-A10 Neighboring gene pseudo Neighboring gene NF-X-like 1 Neighboring gene LOW protein: exocyst complex component-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diversity of the superfamily of phloem lectins (phloem protein 2) in angiosperms. Dinant S, et al. Plant Physiol, 2003 Jan. PMID 12529520, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100889.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Carbohydrate-binding protein
    NP_563862.1
    • Carbohydrate-binding protein; FUNCTIONS IN: carbohydrate binding; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Carbohydrate-binding protein (TAIR:AT1G59510.1); Has 114 Blast hits to 112 proteins in 22 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3325799..3327614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100889.4 → NP_563862.1  Carbohydrate-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563862.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCL9, Q9SY57
      UniProtKB/TrEMBL
      A0A178WPT1, A0A5S9TKY4, A0A654E8M3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SY57.1

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