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    FRS11 FAR1-related sequence 11 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837563, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FRS11
    Official Full Name
    FAR1-related sequence 11
    Primary source
    TAIR:AT1G10240
    Locus tag
    AT1G10240
    See related
    Araport:AT1G10240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14N23.12; F14N23_12; FAR1-related sequence 11
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    Genomic context

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    See FRS11 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (3356627..3359853, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transmembrane protein Neighboring gene E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein Neighboring gene paired amphipathic helix Sin3-like protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001331895.1
    NM_100898.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FAR1-related sequence 11
    NP_563865.1
    • FAR1-related sequence 11 (FRS11); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 10 (TAIR:AT5G28530.1); Has 1389 Blast hits to 1253 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 83; Plants - 1296; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3356627..3359853 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100898.3 → NP_563865.1  FAR1-related sequence 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563865.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SY66
      UniProtKB/TrEMBL
      A0A178WN62, A0A5S9TM88, A0A654E8N2
      Conserved Domains (1) summary
      PLN03097
      Location:29 → 648
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

    2. NM_001331895.1 → NP_001321860.1  FAR1-related sequence 11 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SY66
      UniProtKB/TrEMBL
      A0A178WN62, A0A5S9TM88, A0A654E8N2
      Conserved Domains (1) summary
      PLN03097
      Location:29 → 648
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SY66.1

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