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    ERD (early-responsive to dehydration stress) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837748, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ERD (early-responsive to dehydration stress) family protein
    Primary source
    TAIR:AT1G11960
    Locus tag
    AT1G11960
    See related
    Araport:AT1G11960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12F1.17; F12F1_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (4039566..4044046, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene Transcription factor jumonji (jmjC) domain-containing protein Neighboring gene Ubiquitin-like superfamily protein Neighboring gene ubiquitin-related protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity. Thor K, et al. Nature, 2020 Sep. PMID 32846426, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001332014.1
    NM_001332015.1
    NM_101068.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium channel activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within pathogen-associated molecular pattern receptor signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within stomatal movement IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ERD (early-responsive to dehydration stress) family protein
    NP_172660.5
    • ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT1G62320.1); Has 1452 Blast hits to 1271 proteins in 185 species: Archae - 0; Bacteria - 4; Metazoa - 184; Fungi - 702; Plants - 435; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4039566..4044046 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101068.6 → NP_172660.5  ERD (early-responsive to dehydration stress) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172660.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B5TYT3, O65383
      UniProtKB/TrEMBL
      A0A097NUP7, A0A654EE56
      Conserved Domains (4) summary
      COG5594
      Location:11 → 747
      COG5594; Uncharacterized integral membrane protein [Function unknown]
      pfam02714
      Location:322 → 645
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
      pfam13967
      Location:6 → 179
      RSN1_TM; Late exocytosis, associated with Golgi transport
      pfam14703
      Location:237 → 301
      PHM7_cyt; Cytosolic domain of 10TM putative phosphate transporter

    2. NM_001332014.1 → NP_001320707.1  ERD (early-responsive to dehydration stress) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANP4

    3. NM_001332015.1 → NP_001320706.1  ERD (early-responsive to dehydration stress) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B5TYT3, O65383
      UniProtKB/TrEMBL
      A0A097NUP7, A0A654EE56
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B5TYT3.1

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