U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    XIE Myosin family protein with Dil domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841898, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    XIE
    Official Full Name
    Myosin family protein with Dil domain-containing protein
    Primary source
    TAIR:AT1G54560
    Locus tag
    AT1G54560
    See related
    Araport:AT1G54560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATXIE; MYOSIN XI E; T22H22.1; T22H22_1
    Summary
    member of Myosin-like proteins
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See XIE in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    38
    Sequence:
    Chromosome: 1; NC_003070.9 (20371469..20380156, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Esterase/lipase/thioesterase family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Class XI Myosins Move Specific Organelles in Pollen Tubes and Are Required for Normal Fertility and Pollen Tube Growth in Arabidopsis. Madison SL, et al. Plant Physiol, 2015 Nov. PMID 26358416, Free PMC Article
    2. Truncated myosin XI tail fusions inhibit peroxisome, Golgi, and mitochondrial movement in tobacco leaf epidermal cells: a genetic tool for the next generation. Sparkes IA, et al. J Exp Bot, 2008. PMID 18503043, Free PMC Article
    3. Molecular analysis of the myosin gene family in Arabidopsis thaliana. Kinkema M, et al. Plant Mol Biol, 1994 Nov. PMID 7811972
    4. Analysis of the myosins encoded in the recently completed Arabidopsis thaliana genome sequence. Reddy AS, et al. Genome Biol, 2001. PMID 11516337, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis myosins XIE, and XIK, are involved in Golgi, peroxisome, and mitochondrial movement.
      Title: Truncated myosin XI tail fusions inhibit peroxisome, Golgi, and mitochondrial movement in tobacco leaf epidermal cells: a genetic tool for the next generation.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cytoskeletal motor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables microfilament motor activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin filament organization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within actin filament-based movement TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within organelle localization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of myosin complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Myosin family protein with Dil domain-containing protein
    NP_175858.1
    • XIE; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G08730.1); Has 72336 Blast hits to 42875 proteins in 2809 species: Archae - 1097; Bacteria - 9896; Metazoa - 36316; Fungi - 5231; Plants - 3078; Viruses - 250; Other Eukaryotes - 16468 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20371469..20380156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333655.1 → NP_001320715.1  Myosin family protein with Dil domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJA4, A0A1P8ANP9, A0A348B7A5, A0A384LJH0
      Conserved Domains (3) summary
      COG5022
      Location:9 → 1403
      COG5022; Myosin heavy chain [General function prediction only]
      cd01384
      Location:76 → 720
      MYSc_Myo11; class XI myosin, motor domain
      cl03379
      Location:1327 → 1489
      Myo5-like_CBD; Cargo binding domain of myosin 5 and similar proteins

    2. NM_104334.2 → NP_175858.1  Myosin family protein with Dil domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175858.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HWY6, Q9ZVN3
      UniProtKB/TrEMBL
      A0A348B7A5
      Conserved Domains (8) summary
      TIGR01843
      Location:723 → 980
      type_I_hlyD; type I secretion membrane fusion protein, HlyD family
      smart00242
      Location:66 → 734
      MYSc; Myosin. Large ATPases
      cd15475
      Location:1114 → 1495
      MyosinXI_CBD; cargo binding domain of myosin XI
      cd01384
      Location:79 → 723
      MYSc_Myo11; class XI myosin, motor domain
      pfam02736
      Location:14 → 51
      Myosin_N; Myosin N-terminal SH3-like domain
      pfam07926
      Location:907 → 1054
      TPR_MLP1_2; TPR/MLP1/MLP2-like protein
      cl21462
      Location:1016 → 1052
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
      cl21509
      Location:889 → 1026
      ApoLp-III_like; Apolipophorin-III and similar insect proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HWY6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.