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    SNARE-associated protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844248, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SNARE-associated protein-like protein
    Primary source
    TAIR:AT1G79070
    Locus tag
    AT1G79070
    See related
    Araport:AT1G79070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    YUP8H12R.31; YUP8H12R_31
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (29744271..29745815, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene recA DNA recombination family protein Neighboring gene miscRNA Neighboring gene TPRXL Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_106558.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of BLOC-1 complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SNARE-associated protein-like protein
    NP_178028.2
    • SNARE-associated protein-related; Has 39 Blast hits to 39 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29744271..29745815 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334868.1 → NP_001320379.1  SNARE-associated protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WVR4, A0A654ERW5, Q8GXI5
      Conserved Domains (1) summary
      pfam14712
      Location:35 → 121
      Snapin_Pallidin; Snapin/Pallidin

    2. NM_106558.4 → NP_178028.2  SNARE-associated protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178028.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WVR4, A0A654ERW5, Q8GXI5
      Conserved Domains (1) summary
      pfam14712
      Location:35 → 121
      Snapin_Pallidin; Snapin/Pallidin
    Nucleotide Protein
    Heading Accession and Version

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