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    ER membrane protein complex subunit-like protein (DUF2012) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817069, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ER membrane protein complex subunit-like protein (DUF2012)
    Primary source
    TAIR:AT2G25310
    Locus tag
    AT2G25310
    See related
    Araport:AT2G25310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22F11.10; T22F11_10
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (10777068..10779264, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Galactosyltransferase family protein Neighboring gene Putative membrane lipoprotein Neighboring gene ECA1 gametogenesis related family protein Neighboring gene TRAF-like family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_128088.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum HDA PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    ER membrane protein complex subunit-like protein (DUF2012)
    NP_180103.2
    • FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784), Protein of unknown function DUF2012 (InterPro:IPR019008); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2012) (TAIR:AT4G32130.1); Has 307 Blast hits to 307 proteins in 138 species: Archae - 0; Bacteria - 14; Metazoa - 141; Fungi - 68; Plants - 50; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10777068..10779264 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128088.5 → NP_180103.2  ER membrane protein complex subunit-like protein (DUF2012) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180103.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNP6, Q84JM6, Q9SIR2
      Conserved Domains (1) summary
      cl21470
      Location:60 → 158
      Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
    Nucleotide Protein
    Heading Accession and Version

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