U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    XIF myosin-like protein XIF [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817748, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    XIF
    Official Full Name
    myosin-like protein XIF
    Primary source
    TAIR:AT2G31900
    Locus tag
    AT2G31900
    See related
    Araport:AT2G31900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATMYO5; ATXIF; F20M17.6; F20M17_6; MYOSIN 5; MYOSIN XI F; myosin-like protein XIF
    Summary
    Encodes an novel myosin isoform.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See XIF in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    41
    Sequence:
    Chromosome: 2; NC_003071.7 (13560370..13570469, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ncRNA Neighboring gene RAP Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cation/H+ exchanger 21 Neighboring gene elongation factor 1-delta, putative (DUF936)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Molecular analysis of the myosin gene family in Arabidopsis thaliana. Kinkema M, et al. Plant Mol Biol, 1994 Nov. PMID 7811972
    2. Analysis of the myosins encoded in the recently completed Arabidopsis thaliana genome sequence. Reddy AS, et al. Genome Biol, 2001. PMID 11516337, Free PMC Article
    3. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Chang IF, et al. Proteomics, 2009 Jun. PMID 19452453, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001336351.1
    NM_001336354.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cytoskeletal motor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cytoskeletal motor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within actin filament-based movement TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of unconventional myosin complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    myosin-like protein XIF
    NP_001318329.1
    • myosin-like protein XIF (XIF); CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT5G20490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13560370..13570469 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336352.1 → NP_001323600.1  myosin-like protein XIF [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXP2, A0A654EXZ7

    2. NM_001336353.1 → NP_001323601.1  myosin-like protein XIF [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXI6, A0A7G2EAK8

    3. NM_128748.3 → NP_180749.2  myosin-like protein XIF [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180749.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IRU3, Q9SKB0
      UniProtKB/TrEMBL
      A0A5S9X337, A0A654EXZ7
      Conserved Domains (2) summary
      COG5022
      Location:10 → 1452
      COG5022; Myosin heavy chain [General function prediction only]
      cd01384
      Location:76 → 719
      MYSc_Myo11; class XI myosin, motor domain

    4. NM_001336351.1 → NP_001318329.1  myosin-like protein XIF [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IRU3, Q9SKB0
      UniProtKB/TrEMBL
      A0A5S9X337, A0A654EXZ7
      Conserved Domains (2) summary
      COG5022
      Location:10 → 1452
      COG5022; Myosin heavy chain [General function prediction only]
      cd01384
      Location:76 → 719
      MYSc_Myo11; class XI myosin, motor domain

    5. NM_001336354.1 → NP_001323599.1  myosin-like protein XIF [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXI9, A0A654EXZ7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IRU3.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.