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    Winged helix-turn-helix transcription repressor DNA-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841864, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Winged helix-turn-helix transcription repressor DNA-binding protein
    Primary source
    TAIR:AT1G54230
    Locus tag
    AT1G54230
    See related
    Araport:AT1G54230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D21.5; F20D21_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (20250518..20252365)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L18ae family Neighboring gene Dihydrolipoamide acetyltransferase, long form protein Neighboring gene winged-helix DNA-binding transcription factor family protein Neighboring gene RNA polymerase Rpb8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_104301.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Winged helix-turn-helix transcription repressor DNA-binding protein
    NP_175825.2
    • Winged helix-turn-helix transcription repressor DNA-binding; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: leaf whorl, sperm cell, flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT1G54240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20250518..20252365
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104301.2 → NP_175825.2  Winged helix-turn-helix transcription repressor DNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175825.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EK21, A0A7G2DXQ7, F4HV91
      Conserved Domains (1) summary
      smart00526
      Location:15 → 77
      H15; Domain in histone families 1 and 5
    Nucleotide Protein
    Heading Accession and Version

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