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    RABA1i RAB GTPase homolog A1I [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839755, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RABA1i
    Official Full Name
    RAB GTPase homolog A1I
    Primary source
    TAIR:AT1G28550
    Locus tag
    AT1G28550
    See related
    Araport:AT1G28550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtRABA1i; F3M18.2; RAB GTPase homolog A1I
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    Genomic context

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    See RABA1i in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (10036601..10037872, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Optic atrophy 3 protein (OPA3) Neighboring gene vascular plant one zinc finger protein Neighboring gene deneddylase Neighboring gene uncharacterized protein Neighboring gene snRNA activating complex family protein Neighboring gene SGNH hydrolase-type esterase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Null mutants of individual RABA genes impact the proportion of different cell wall components in stem tissue of Arabidopsis thaliana. Lunn D, et al. PLoS One, 2013. PMID 24124508, Free PMC Article
    2. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Involved in determining the composition of the cell wall, particularly with respect to pectin content, possibly through regulating trafficking of pectin from the Golgi to the apoplast. [RABA1i]
      Title: Null mutants of individual RABA genes impact the proportion of different cell wall components in stem tissue of Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    RAB GTPase homolog A1I
    NP_174177.1
    • RAB GTPase homolog A1I (RABA1i); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1H (TAIR:AT2G33870.1); Has 26472 Blast hits to 26426 proteins in 734 species: Archae - 24; Bacteria - 151; Metazoa - 13774; Fungi - 3933; Plants - 2930; Viruses - 20; Other Eukaryotes - 5640 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10036601..10037872 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102623.2 → NP_174177.1  RAB GTPase homolog A1I [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174177.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FXJ0, Q9S810
      UniProtKB/TrEMBL
      A0A178WE67, A0A5S9WA78
      Conserved Domains (1) summary
      cd01868
      Location:11 → 175
      Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S810.1

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