U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    UGT80B1 UDP-Glycosyltransferase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840946, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    UGT80B1
    Official Full Name
    UDP-Glycosyltransferase superfamily protein
    Primary source
    TAIR:AT1G43620
    Locus tag
    AT1G43620
    See related
    Araport:AT1G43620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10P12.7; T10P12_7; TRANSPARENT TESTA 15; TT15
    Summary
    Encodes a UDP-glucose:sterol-glucosyltransferase. Mutants produce pale greenish-brown seeds whose dormancy was slightly reduced
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See UGT80B1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (16425412..16430287, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene plant/protein (DUF793) Neighboring gene tubby like protein 5

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Characterization of Arabidopsis sterol glycosyltransferase TTG15/UGT80B1 role during freeze and heat stress. Mishra MK, et al. Plant Signal Behav, 2015. PMID 26382564, Free PMC Article
    2. Characterization of tt15, a novel transparent testa mutant of Arabidopsis thaliana (L.) Heynh. Focks N, et al. Planta, 1999 May. PMID 10384728
    3. TRANSPARENT TESTA 16 and 15 act through different mechanisms to control proanthocyanidin accumulation in Arabidopsis testa. Xu W, et al. J Exp Bot, 2017 May 17. PMID 28830101, Free PMC Article
    4. Mutations in UDP-Glucose:sterol glucosyltransferase in Arabidopsis cause transparent testa phenotype and suberization defect in seeds. DeBolt S, et al. Plant Physiol, 2009 Sep. PMID 19641030, Free PMC Article
    5. Functional diversification of two UGT80 enzymes required for steryl glucoside synthesis in Arabidopsis. Stucky DF, et al. J Exp Bot, 2015 Jan. PMID 25316063, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the roles and mode of action of TT16 and TT15 during seed development and proanthocyanidin biosynthesis
      Title: TRANSPARENT TESTA 16 and 15 act through different mechanisms to control proanthocyanidin accumulation in Arabidopsis testa.
    2. the functional role of TTG15/UGT80B1 gene of Arabidopsis thaliana in freeze/thaw and heat shock stress, was analyzed.
      Title: Characterization of Arabidopsis sterol glycosyltransferase TTG15/UGT80B1 role during freeze and heat stress.
    3. Both UGT80A2 and UGT80B1, but not UGT713B1 were shown to be coordinately down-regulated during seed imbibition when SG levels decline, consistent with similar functions as UGT80 enzymes.
      Title: Functional diversification of two UGT80 enzymes required for steryl glucoside synthesis in Arabidopsis.
    4. Mutation of UGT80B1 principally alters embryonic development and seed suberin accumulation and cutin formation in the seed coat, leading to abnormal permeability and tetrazolium salt uptake. [UGT80B1]
      Title: Mutations in UDP-Glucose:sterol glucosyltransferase in Arabidopsis cause transparent testa phenotype and suberization defect in seeds.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help
    NM_001084205.2
    NM_001333213.1
    NM_001333214.1
    NM_001333215.1
    NM_001333216.1
    NM_001333217.1
    NM_103487.4
    NM_202238.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables sterol 3-beta-glucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sterol 3-beta-glucosyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    NOT involved_in cellulose biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    NOT involved_in cold acclimation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within flavonoid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in lipid glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within seed coat development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within seed germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within sterol metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    UDP-Glycosyltransferase superfamily protein
    NP_001077674.1
    • UGT80B1; FUNCTIONS IN: transferase activity, transferring glycosyl groups, sterol 3-beta-glucosyltransferase activity; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28 (InterPro:IPR004276), UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G07020.2); Has 2818 Blast hits to 2779 proteins in 673 species: Archae - 0; Bacteria - 1703; Metazoa - 471; Fungi - 384; Plants - 146; Viruses - 8; Other Eukaryotes - 106 (source: NCBI BLink).
    NP_001319161.1
    • UGT80B1; FUNCTIONS IN: transferase activity, transferring glycosyl groups, sterol 3-beta-glucosyltransferase activity; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28 (InterPro:IPR004276), UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G07020.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_175027.1
    • UGT80B1; FUNCTIONS IN: transferase activity, transferring glycosyl groups, sterol 3-beta-glucosyltransferase activity; INVOLVED IN: seed germination, flavonoid biosynthetic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28 (InterPro:IPR004276), UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G07020.2); Has 2816 Blast hits to 2777 proteins in 671 species: Archae - 0; Bacteria - 1701; Metazoa - 471; Fungi - 384; Plants - 146; Viruses - 8; Other Eukaryotes - 106 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      16425412..16430287 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084205.2 → NP_001077674.1  UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077674.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XIG1
      UniProtKB/TrEMBL
      A0A178W8M4, A0A384L9N2, A0A5S9WM27, W8Q3P6
      Conserved Domains (1) summary
      cd03784
      Location:156 → 573
      GT1_Gtf-like; UDP-glycosyltransferases and similar proteins

    2. NM_103487.4 → NP_175027.1  UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175027.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XIG1
      UniProtKB/TrEMBL
      A0A178W8M4, A0A384L9N2, A0A5S9WM27, W8Q3P6
      Conserved Domains (1) summary
      cd03784
      Location:156 → 573
      GT1_Gtf-like; UDP-glycosyltransferases and similar proteins

    3. NM_202238.3 → NP_973967.1  UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973967.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XIG1
      UniProtKB/TrEMBL
      A0A178W8M4, A0A384L9N2, A0A5S9WM27, W8Q3P6
      Conserved Domains (1) summary
      cd03784
      Location:156 → 573
      GT1_Gtf-like; UDP-glycosyltransferases and similar proteins

    4. NM_001333213.1 → NP_001319161.1  UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XIG1
      UniProtKB/TrEMBL
      A0A178W8M4, A0A384L9N2, A0A5S9WM27, W8Q3P6
      Conserved Domains (1) summary
      cd03784
      Location:156 → 573
      GT1_Gtf-like; UDP-glycosyltransferases and similar proteins

    5. NM_001333216.1 → NP_001320891.1  UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XIG1
      UniProtKB/TrEMBL
      A0A178W8M4, A0A384L9N2, A0A5S9WM27, W8Q3P6
      Conserved Domains (1) summary
      cd03784
      Location:156 → 573
      GT1_Gtf-like; UDP-glycosyltransferases and similar proteins

    6. NM_001333215.1 → NP_001320888.1  UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XIG1
      UniProtKB/TrEMBL
      A0A178W8M4, A0A384L9N2, A0A5S9WM27, W8Q3P6
      Conserved Domains (1) summary
      cd03784
      Location:156 → 573
      GT1_Gtf-like; UDP-glycosyltransferases and similar proteins

    7. NM_001333214.1 → NP_001320890.1  UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XIG1
      UniProtKB/TrEMBL
      A0A178W8M4, A0A384L9N2, A0A5S9WM27, W8Q3P6
      Conserved Domains (1) summary
      cd03784
      Location:156 → 573
      GT1_Gtf-like; UDP-glycosyltransferases and similar proteins

    8. NM_001333217.1 → NP_001320889.1  UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AP89
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XIG1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.