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    UREF urease accessory protein F [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838786, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UREF
    Official Full Name
    urease accessory protein F
    Primary source
    TAIR:AT1G21840
    Locus tag
    AT1G21840
    See related
    Araport:AT1G21840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T26F17.5; urease accessory protein F
    Summary
    Encodes a urease accessory protein which is essential for the activation of plant urease.
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    Genomic context

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    See UREF in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (7666414..7667794)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Plant thionin family protein Neighboring gene SKU5 similar 8 Neighboring gene SKU5 similar 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of three urease accessory proteins that are required for urease activation in Arabidopsis. Witte CP, et al. Plant Physiol, 2005 Nov. PMID 16244137, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtUreD, AtUreF, and AtUreG are urease accessory proteins that are the core components for plant urease activation. [AtUreF]
      Title: Identification of three urease accessory proteins that are required for urease activation in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332530.1
    NM_102032.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nickel cation binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables urease activator activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    urease accessory protein F
    NP_173602.1
    • urease accessory protein F (UREF); FUNCTIONS IN: nickel ion binding; INVOLVED IN: nitrogen compound metabolic process, positive regulation of metalloenzyme activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Urease accessory protein UreF (InterPro:IPR002639); Has 962 Blast hits to 961 proteins in 436 species: Archae - 16; Bacteria - 785; Metazoa - 9; Fungi - 76; Plants - 41; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7666414..7667794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102032.4 → NP_173602.1  urease accessory protein F [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173602.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      E0ZS50, Q9XHZ3
      UniProtKB/TrEMBL
      A0A5S9VH80
      Conserved Domains (1) summary
      cl19817
      Location:24 → 240
      UreF; UreF

    2. NM_001332530.1 → NP_001322780.1  urease accessory protein F [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      E0ZS50, Q9XHZ3
      UniProtKB/TrEMBL
      A0A5S9VH80
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XHZ3.1

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