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    DAA1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842716, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DAA1
    Official Full Name
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Primary source
    TAIR:AT1G64110
    Locus tag
    AT1G64110
    See related
    Araport:AT1G64110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DUO1-activated ATPase 1; F22C12.12; F22C12_12
    Summary
    Target promoter of the male germline-specific transcription factor DUO1.
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    Genomic context

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    See DAA1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Sequence:
    Chromosome: 1; NC_003070.9 (23796698..23801799, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene NAC domain containing protein 27 Neighboring gene Putative membrane lipoprotein Neighboring gene tRNA-Leu Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Arabidopsis ATPase gene involved in nematode-induced syncytium development and abiotic stress responses. Ali MA, et al. Plant J, 2013 Jun. PMID 23480402, Free PMC Article
    2. The R2R3 MYB transcription factor DUO1 activates a male germline-specific regulon essential for sperm cell differentiation in Arabidopsis. Borg M, et al. Plant Cell, 2011 Feb. PMID 21285328, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data show that ATPase At1g64110 is important for syncytium and nematode development.
      Title: An Arabidopsis ATPase gene involved in nematode-induced syncytium development and abiotic stress responses.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001124072.1
    NM_001334146.1
    NM_001334147.1
    NM_105085.2
    NM_179511.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen sperm cell differentiation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    NP_001319315.1
    • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_564824.1
    • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 45691 Blast hits to 43156 proteins in 3301 species: Archae - 1573; Bacteria - 21964; Metazoa - 5046; Fungi - 3902; Plants - 3262; Viruses - 32; Other Eukaryotes - 9912 (source: NCBI BLink).
    NP_849842.1
    • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 45379 Blast hits to 42847 proteins in 3276 species: Archae - 1573; Bacteria - 21664; Metazoa - 5045; Fungi - 3902; Plants - 3254; Viruses - 30; Other Eukaryotes - 9911 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23796698..23801799 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179511.2 → NP_849842.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849842.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCS4, A0A654EMD9, F4I5A3
      Conserved Domains (2) summary
      pfam17862
      Location:711 → 755
      AAA_lid_3; AAA+ lid domain
      cl38936
      Location:522 → 687
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. NM_001334146.1 → NP_001319315.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEJ0, B3H7I9

    3. NM_105085.2 → NP_564824.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564824.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCS4, Q940D1
      Conserved Domains (3) summary
      smart00382
      Location:551 → 685
      AAA; ATPases associated with a variety of cellular activities
      pfam00004
      Location:553 → 684
      AAA; ATPase family associated with various cellular activities (AAA)
      cl21455
      Location:523 → 571
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    4. NM_001124072.1 → NP_001117544.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117544.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEJ0, B3H7I9
      Conserved Domains (3) summary
      smart00382
      Location:554 → 688
      AAA; ATPases associated with a variety of cellular activities
      pfam00004
      Location:556 → 687
      AAA; ATPase family associated with various cellular activities (AAA)
      cl21455
      Location:526 → 574
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    5. NM_001334147.1 → NP_001323399.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCS4, A0A654EMD9, F4I5A3
      Conserved Domains (2) summary
      pfam17862
      Location:711 → 755
      AAA_lid_3; AAA+ lid domain
      cl38936
      Location:522 → 687
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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