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    EDA1 F-box associated ubiquitination effector family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842259, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EDA1
    Official Full Name
    F-box associated ubiquitination effector family protein
    Primary source
    TAIR:AT1G59680
    Locus tag
    AT1G59680
    See related
    Araport:AT1G59680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo sac development arrest 1; T30E16.27; T30E16_27
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    Genomic context

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    See EDA1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (21933012..21934216)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase TAU 15 Neighboring gene F-box family protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene glutathione S-transferase TAU 16

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within megagametogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    F-box associated ubiquitination effector family protein
    NP_176177.1
    • embryo sac development arrest 1 (EDA1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT3G14030.1); Has 1106 Blast hits to 684 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21933012..21934216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333862.1 → NP_001323259.1  F-box associated ubiquitination effector family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8Y0, A0A1P8AWI0, A0A5S9WMV3

    2. NM_104661.1 → NP_176177.1  F-box associated ubiquitination effector family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176177.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LQ46
      Conserved Domains (2) summary
      pfam07734
      Location:116 → 253
      FBA_1; F-box associated
      pfam00646
      Location:1 → 42
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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