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    SYP52 syntaxin of plants 52 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844297, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SYP52
    Official Full Name
    syntaxin of plants 52
    Primary source
    TAIR:AT1G79590
    Locus tag
    AT1G79590
    See related
    Araport:AT1G79590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSYP52; F20B17.2; F20B17_2; syntaxin of plants 52
    Summary
    Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.
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    Genomic context

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    See SYP52 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (29946185..29948807)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene FTSH protease 12 Neighboring gene kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein Neighboring gene NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene Na+/H+ antiporter 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtSYP51/52 functions diverge in the post-Golgi traffic and differently affect vacuolar sorting. De Benedictis M, et al. Mol Plant, 2013 May. PMID 23087325
    2. Interactions between syntaxins identify at least five SNARE complexes within the Golgi/prevacuolar system of the Arabidopsis cell. Sanderfoot AA, et al. Mol Biol Cell, 2001 Dec. PMID 11739776, Free PMC Article
    3. The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Sanderfoot AA, et al. Plant Physiol, 2000 Dec. PMID 11115874, Free PMC Article
    4. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    5. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the AtSYP51 and the AtSYP52 roles differ in the traffic to the vacuole.
      Title: AtSYP51/52 functions diverge in the post-Golgi traffic and differently affect vacuolar sorting.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036224.2
    NM_001334895.1
    NM_106607.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables SNAP receptor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endosome membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in endosome membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    syntaxin of plants 52
    NP_001031301.1
    • syntaxin of plants 52 (SYP52); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 51 (TAIR:AT1G16240.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_565213.1
    • syntaxin of plants 52 (SYP52); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 51 (TAIR:AT1G16240.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29946185..29948807
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106607.5 → NP_565213.1  syntaxin of plants 52 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565213.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94KK7, Q9MA16
      UniProtKB/TrEMBL
      A0A178W707, A0A5S9WVS9, A0A654ES17
      Conserved Domains (2) summary
      cd15841
      Location:140 → 197
      SNARE_Qc; SNARE motif, subgroup Qc
      pfam05739
      Location:173 → 224
      SNARE; SNARE domain

    2. NM_001036224.2 → NP_001031301.1  syntaxin of plants 52 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031301.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94KK7, Q9MA16
      UniProtKB/TrEMBL
      A0A178W707, A0A5S9WVS9, A0A654ES17
      Conserved Domains (2) summary
      cd15841
      Location:140 → 197
      SNARE_Qc; SNARE motif, subgroup Qc
      pfam05739
      Location:173 → 224
      SNARE; SNARE domain

    3. NM_001334895.1 → NP_001321707.1  syntaxin of plants 52 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W707, A0A1P8ARR3, A0A5S9WVS9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94KK7.1

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