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    alanine-tRNA ligase, putative (DUF760) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841266, updated on 18-Sep-2024

    Summary

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    Official Full Name
    alanine-tRNA ligase, putative (DUF760)
    Primary source
    TAIR:AT1G48450
    Locus tag
    AT1G48450
    See related
    Araport:AT1G48450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1N15.6; T1N15_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (17908503..17910523, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Dihydroxyacetone kinase Neighboring gene B-cell receptor-associated 31-like protein Neighboring gene tRNA-processing ribonuclease BN Neighboring gene ncRNA Neighboring gene glutamine synthetase 1;5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036077.1
    NM_103741.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    alanine-tRNA ligase, putative (DUF760)
    NP_001031154.1
    • Protein of unknown function (DUF760); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT3G17800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001185170.1
    • Protein of unknown function (DUF760); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT3G17800.1).
    NP_175278.1
    • Protein of unknown function (DUF760); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT3G17800.1); Has 144 Blast hits to 144 proteins in 27 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17908503..17910523 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198241.2 → NP_001185170.1  alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185170.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0Z2H5, F4HYF6
      Conserved Domains (1) summary
      pfam05542
      Location:200 → 266
      DUF760; Protein of unknown function (DUF760)

    2. NM_103741.6 → NP_175278.1  alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175278.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ESE9, Q9LP80
      Conserved Domains (1) summary
      pfam05542
      Location:200 → 266
      DUF760; Protein of unknown function (DUF760)

    3. NM_001036077.1 → NP_001031154.1  alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031154.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0Z2H5, F4HYF8
      Conserved Domains (1) summary
      pfam05542
      Location:200 → 266
      DUF760; Protein of unknown function (DUF760)
    Nucleotide Protein
    Heading Accession and Version

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