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    B3 domain protein (DUF313) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837102, updated on 18-Sep-2024

    Summary

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    Official Full Name
    B3 domain protein (DUF313)
    Primary source
    TAIR:AT1G05920
    Locus tag
    AT1G05920
    See related
    Araport:AT1G05920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20M3.20; T20M3_20
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (1796778..1798254)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene endonuclease III 2 Neighboring gene cell division cycle protein 48-related / CDC48-like protein Neighboring gene B3 domain protein (DUF313) Neighboring gene cationic amino acid transporter 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100473.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    B3 domain protein (DUF313)
    NP_172083.1
    • FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT3G24850.1); Has 196 Blast hits to 185 proteins in 22 species: Archae - 0; Bacteria - 7; Metazoa - 15; Fungi - 10; Plants - 139; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1796778..1798254
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100473.2 → NP_172083.1  B3 domain protein (DUF313) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172083.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5RM09, Q9MA33
      UniProtKB/TrEMBL
      A0A178WI17, A0A5S9SVI5
      Conserved Domains (1) summary
      pfam03754
      Location:161 → 278
      DUF313; Domain of unknown function (DUF313)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5RM09.1

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