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    POP1 ribonuclease Ps [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819343, updated on 18-Sep-2024

    Summary

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    Official Symbol
    POP1
    Official Full Name
    ribonuclease Ps
    Primary source
    TAIR:AT2G47300
    Locus tag
    AT2G47300
    See related
    Araport:AT2G47300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    similar to yeast POP1
    Summary
    Encodes a protein involved in rRNA but not tRNA maturation.
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    Genomic context

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    See POP1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (19418443..19422241)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Pectin lyase-like superfamily protein Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene flowering time control protein-related / FCA gamma-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis. Gutmann B, et al. Genes Dev, 2012 May 15. PMID 22549728, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084603.2
    NM_001084604.1
    NM_001337257.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ribonuclease P activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in tRNA 5'-leader removal IEA
    Inferred from Electronic Annotation
    more info
    		  
    NOT involved_in tRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleolar ribonuclease P complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of ribonuclease MRP complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribonuclease Ps
    NP_001078072.1
    • ribonuclease Ps; FUNCTIONS IN: ribonuclease P activity; INVOLVED IN: tRNA 5'-leader removal, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: POPLD (InterPro:IPR012590), Ribonuclease P/MRP, subunit POP1 (InterPro:IPR009723); Has 329 Blast hits to 272 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 94; Plants - 49; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
    NP_001078073.1
    • ribonuclease Ps; FUNCTIONS IN: ribonuclease P activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: POPLD (InterPro:IPR012590); Has 176 Blast hits to 168 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 69; Plants - 36; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19418443..19422241
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084603.2 → NP_001078072.1  ribonuclease Ps [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078072.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IL30, F4IL31, L0N807, O22903, O22904, Q4PL83, Q4PL84
      UniProtKB/TrEMBL
      A0A178VRG4, A0A5S9X7S9
      Conserved Domains (2) summary
      pfam06978
      Location:124 → 182
      POP1; Ribonucleases P/MRP protein subunit POP1
      pfam08170
      Location:489 → 562
      POPLD; POPLD (NUC188) domain

    2. NM_001337257.1 → NP_001324565.1  ribonuclease Ps [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VRG4, A0A1P8B0J2

    3. NM_001084604.1 → NP_001078073.1  ribonuclease Ps [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078073.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IL31
      Conserved Domains (1) summary
      pfam08170
      Location:323 → 395
      POPLD; POPLD (NUC188) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IL30.1

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