Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Cystathionine beta-synthase (CBS) protein
Primary source: TAIR:AT1G69800
Locus tag: AT1G69800
See related: Araport:AT1G69800
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T17F3.17; T17F3_17
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 5

Sequence:: Chromosome: 1; NC_003070.9 (26274195..26276336, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

In order to understand the characteristics of plant CBS domain-containing proteins, structural study of the cystathionine beta-synthase domain-containing protein CDCP2 has been initiated.
Title: Purification, crystallization and preliminary X-ray diffraction analysis of a cystathionine beta-synthase domain-containing protein, CDCP2, from Arabidopsis thaliana.

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General gene information

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Markers

At-8.5BJ-573 (e-PCR)
- UniSTS:229406

Homology

Orthologs from OrthoDB

NM_001084332.1

Supported by ESTs:

NM_001334427.1

Supported by ESTs:

NM_105648.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in mitochondrion	HDA more info	PubMed

General protein information

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Preferred Names: Cystathionine beta-synthase (CBS) protein

NP_001077801.1

Cystathionine beta-synthase (CBS) protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: SNF1-related protein kinase regulatory subunit gamma 1 (TAIR:AT3G48530.1); Has 884 Blast hits to 801 proteins in 238 species: Archae - 117; Bacteria - 172; Metazoa - 187; Fungi - 63; Plants - 180; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).

NP_564975.2

Cystathionine beta-synthase (CBS) protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: SNF1-related protein kinase regulatory subunit gamma 1 (TAIR:AT3G48530.1); Has 879 Blast hits to 799 proteins in 237 species: Archae - 117; Bacteria - 170; Metazoa - 187; Fungi - 63; Plants - 180; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

26274195..26276336 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_105648.4 → NP_564975.2 Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_564975.2

Status: REVIEWED

UniProtKB/Swiss-Prot

A8MQK6, Q9CAR3

UniProtKB/TrEMBL

A0A178W5I4, A0A5S9WQY9

Conserved Domains (2) summary

cd02205
Location:296 → 422

CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily

cl15354
Location:223 → 340

CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
NM_001334427.1 → NP_001322922.1 Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AVI9
NM_001084332.1 → NP_001077801.1 Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001077801.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9CAR3

Conserved Domains (4) summary

COG0517
Location:325 → 451

CBS; CBS domain [Signal transduction mechanisms]

cd02205
Location:88 → 146

CBS_pair; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

cd04642
Location:324 → 453

CBS_pair_29; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

cl15354
Location:248 → 372

CBS_pair; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...