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    ROH1 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842696, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ROH1
    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT1G63930
    Locus tag
    AT1G63930
    See related
    Araport:AT1G63930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    from the Czech 'roh' meaning 'corner'; T12P18.5; T12P18_5
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    Genomic context

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    See ROH1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (23727794..23729403)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene myb domain protein 103 Neighboring gene miscRNA Neighboring gene monodehydroascorbate reductase 6 Neighboring gene Heavy metal transport/detoxification superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulation of Exocyst Function in Pollen Tube Growth by Phosphorylation of Exocyst Subunit EXO70C2. Saccomanno A, et al. Front Plant Sci, 2020. PMID 33519861, Free PMC Article
    2. EXO70C2 Is a Key Regulatory Factor for Optimal Tip Growth of Pollen. Synek L, et al. Plant Physiol, 2017 May. PMID 28356503, Free PMC Article
    3. Arabidopsis exocyst subunits SEC8 and EXO70A1 and exocyst interactor ROH1 are involved in the localized deposition of seed coat pectin. Kulich I, et al. New Phytol, 2010 Oct. PMID 20618910
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A new interactor of the exocyst subunit Exo70A1, termed Roh1, a member of the DUF793 protein family, is involved in pectin deposition. [ROH1]
      Title: Arabidopsis exocyst subunits SEC8 and EXO70A1 and exocyst interactor ROH1 are involved in the localized deposition of seed coat pectin.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_105066.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within mucilage biosynthetic process involved in seed coat development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within seed coat development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_176576.1
    • from the Czech 'roh' meaning 'corner' (ROH1); CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT4G23530.1); Has 150 Blast hits to 147 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 1; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23727794..23729403
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105066.3 → NP_176576.1  uncharacterized protein AT1G63930 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176576.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CAK4
      UniProtKB/TrEMBL
      A0A5S9WP38, A0A654EMC0
      Conserved Domains (1) summary
      pfam05633
      Location:2 → 404
      BPS1; Protein BYPASS1-related
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CAK4.1

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