U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Regulator of Vps4 activity in the MVB pathway protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844330, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Regulator of Vps4 activity in the MVB pathway protein
    Primary source
    TAIR:AT1G79910
    Locus tag
    AT1G79910
    See related
    Araport:AT1G79910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19K16.13; F19K16_13
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (30054552..30057181)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene D-isomer specific 2-hydroxyacid dehydrogenase family protein Neighboring gene RNA recognition motif (RRM)-containing protein Neighboring gene RAD3-like DNA-binding helicase protein Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene Putative methyltransferase family protein Neighboring gene Heat shock protein 70 (Hsp 70) family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001036227.3
    NM_001334934.1
    NM_106640.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Regulator of Vps4 activity in the MVB pathway protein
    NP_001031304.1
    • Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G52315.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_178109.2
    • Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT4G32350.1); Has 592 Blast hits to 592 proteins in 162 species: Archae - 0; Bacteria - 3; Metazoa - 147; Fungi - 112; Plants - 281; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30054552..30057181
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036227.3 → NP_001031304.1  Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031304.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFC2, A0A5S9WVW6, F4HQD2
      Conserved Domains (1) summary
      pfam03398
      Location:46 → 155
      Ist1; Regulator of Vps4 activity in the MVB pathway

    2. NM_106640.6 → NP_178109.2  Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178109.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFC2, A0A654ES52, Q8L402
      Conserved Domains (1) summary
      pfam03398
      Location:15 → 170
      Ist1; Regulator of Vps4 activity in the MVB pathway

    3. NM_001334934.1 → NP_001320947.1  Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFC2, A0A1P8APC4, A0A5S9WVW6
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.