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    CCOAMT caffeoyl-CoA 3-O-methyltransferase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843126, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CCOAMT
    Official Full Name
    caffeoyl-CoA 3-O-methyltransferase
    Primary source
    TAIR:AT1G67980
    Locus tag
    AT1G67980
    See related
    Araport:AT1G67980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    caffeoyl-CoA 3-O-methyltransferase
    Summary
    Encodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase.
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    Genomic context

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    See CCOAMT in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (25487682..25489312)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene POLLEN DEFECTIVE IN GUIDANCE-like protein Neighboring gene heat shock transcription factor A8 Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene phosphatidylinositol synthase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Developmental expression and substrate specificities of alfalfa caffeic acid 3-O-methyltransferase and caffeoyl coenzyme A 3-O-methyltransferase in relation to lignification. Inoue K, et al. Plant Physiol, 1998 Jul. PMID 9662519, Free PMC Article
    2. Modifications in lignin and accumulation of phenolic glucosides in poplar xylem upon down-regulation of caffeoyl-coenzyme A O-methyltransferase, an enzyme involved in lignin biosynthesis. Meyermans H, et al. J Biol Chem, 2000 Nov 24. PMID 10934215
    3. Plant O-methyltransferases: molecular analysis, common signature and classification. Ibrahim RK, et al. Plant Mol Biol, 1998 Jan. PMID 9484457
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_105468.3
    NM_202375.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables caffeoyl-CoA O-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables caffeoyl-CoA O-methyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within lignin biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within methylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caffeoyl-CoA 3-O-methyltransferase
    NP_564916.2
    • caffeoyl-CoA 3-O-methyltransferase (CCOAMT); CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G67990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974104.1
    • caffeoyl-CoA 3-O-methyltransferase (CCOAMT); CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G24735.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25487682..25489312
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105468.3 → NP_564916.2  caffeoyl-CoA 3-O-methyltransferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564916.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39166, Q9C9W3
      UniProtKB/TrEMBL
      A0A178WKR5, A0A5S9WSI8
      Conserved Domains (1) summary
      PLN02781
      Location:1 → 232
      PLN02781; Probable caffeoyl-CoA O-methyltransferase

    2. NM_202375.1 → NP_974104.1  caffeoyl-CoA 3-O-methyltransferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974104.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HVJ6
      Conserved Domains (1) summary
      cl17173
      Location:2 → 164
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C9W3.1

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