Calcium-binding EF-hand family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Calcium-binding EF-hand family protein
Primary source: TAIR:AT3G10300
Locus tag: AT3G10300
See related: Araport:AT3G10300
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 4

Sequence:: Chromosome: 3; NC_003074.8 (3186038..3188540)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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NM_001035591.2

Supported by ESTs:

NM_001202925.1

Supported by ESTs:

NM_111865.7

Supported by ESTs:

NM_180666.4

Supported by ESTs:

NM_180667.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Calcium-binding EF-hand family protein

NP_001030668.1

Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G04170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NP_001189854.1

Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G04170.1).

NP_187641.2

Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G04170.1); Has 38024 Blast hits to 21889 proteins in 1081 species: Archae - 4; Bacteria - 4124; Metazoa - 20808; Fungi - 4736; Plants - 4579; Viruses - 288; Other Eukaryotes - 3485 (source: NCBI BLink).

NP_850997.1

Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G04170.1); Has 35374 Blast hits to 19340 proteins in 989 species: Archae - 4; Bacteria - 4023; Metazoa - 19169; Fungi - 4508; Plants - 4170; Viruses - 287; Other Eukaryotes - 3213 (source: NCBI BLink).

NP_850998.1

Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G04170.1); Has 37845 Blast hits to 21590 proteins in 1060 species: Archae - 4; Bacteria - 4064; Metazoa - 20778; Fungi - 4728; Plants - 4511; Viruses - 287; Other Eukaryotes - 3473 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

3186038..3188540

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001337868.1 → NP_001327262.1 Calcium-binding EF-hand family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1I9LRS6
NM_111865.7 → NP_187641.2 Calcium-binding EF-hand family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_187641.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q2V3X2, Q3E6V8, Q8W4L0, Q9SS41

UniProtKB/TrEMBL

A0A5S9XAS3, A0A654F7F8

Conserved Domains (2) summary

cd00051
Location:236 → 295

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

pfam13499
Location:236 → 295

EF-hand_7; EF-hand domain pair
NM_180667.4 → NP_850998.1 Calcium-binding EF-hand family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_850998.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VJ07

Conserved Domains (2) summary

cd00051
Location:236 → 298

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

pfam13499
Location:236 → 297

EF-hand_7; EF-hand domain pair
NM_001202925.1 → NP_001189854.1 Calcium-binding EF-hand family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001189854.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VJ07, F4J2M3

Conserved Domains (2) summary

cd00051
Location:237 → 299

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

pfam13499
Location:237 → 298

EF-hand_7; EF-hand domain pair
NM_001035591.2 → NP_001030668.1 Calcium-binding EF-hand family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001030668.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9XAS3, A0A654F7F8

Conserved Domains (2) summary

cd00051
Location:236 → 298

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

pfam13499
Location:236 → 297

EF-hand_7; EF-hand domain pair
NM_180666.4 → NP_850997.1 Calcium-binding EF-hand family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_850997.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8W4L0

Conserved Domains (2) summary

pfam13202
Location:169 → 190

EF-hand_5; EF hand

cl08302
Location:177 → 209

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...