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    CHR11 chromatin-remodeling protein 11 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819814, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CHR11
    Official Full Name
    chromatin-remodeling protein 11
    Primary source
    TAIR:AT3G06400
    Locus tag
    AT3G06400
    See related
    Araport:AT3G06400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    chromatin-remodeling protein 11; F24P17.13; F24P17_13
    Summary
    Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature.
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    Genomic context

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    See CHR11 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    24
    Sequence:
    Chromosome: 3; NC_003074.8 (1940907..1946980)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tubby-like protein 9 Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CHR11, a chromatin-remodeling factor essential for nuclear proliferation during female gametogenesis in Arabidopsis thaliana. Huanca-Mamani W, et al. Proc Natl Acad Sci U S A, 2005 Nov 22. PMID 16286646, Free PMC Article
    2. The ISWI remodeler in plants: protein complexes, biochemical functions, and developmental roles. Li D, et al. Chromosoma, 2017 Jun. PMID 28213686
    3. ISWI proteins participate in the genome-wide nucleosome distribution in Arabidopsis. Li G, et al. Plant J, 2014 May. PMID 24606212
    4. A chloroplast envelope-bound PHD transcription factor mediates chloroplast signals to the nucleus. Sun X, et al. Nat Commun, 2011 Sep 20. PMID 21934661
    5. Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy. Yamaguchi N, et al. Nat Commun, 2018 Dec 11. PMID 30538233, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtISWI is involved in the formation of the evenly spaced pattern of nucleosome arrangement in gene bodies-this pattern is associated with high transcriptional levels of genes.[review]
      Title: The ISWI remodeler in plants: protein complexes, biochemical functions, and developmental roles.
    2. Data indicate that double mutations in the AtISWI genes, CHROMATIN REMODELING 11 (CHR11) and CHR17, resulted in the loss of the evenly spaced nucleosome pattern in gene bodies.
      Title: ISWI proteins participate in the genome-wide nucleosome distribution in Arabidopsis.
    3. AtISWI proteins, CHR11 and CHR17, and RLTs represent a previously unrecognized genetic pathway that is required for the maintenance of the plant vegetative phase. [CHR11]
      Title: Imitation Switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis.
    4. Essential for haploid nuclear proliferation during megagametogenesis and cell expansion during the sporophytic phase of the plant life cycle [CHR11] [CHROMATIN REMODELING COMPLEX subunit 11]
      Title: CHR11, a chromatin-remodeling factor essential for nuclear proliferation during female gametogenesis in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202897.1
    NM_111515.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleosome array spacer activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within embryo sac development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in megagametogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of cellular response to heat IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of timing of transition from vegetative to reproductive phase IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of unidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ISWI-type complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of Swr1 complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    chromatin-remodeling protein 11
    NP_001189826.1
    • chromatin-remodeling protein 11 (CHR11); FUNCTIONS IN: in 7 functions; INVOLVED IN: cell growth, embryo sac development; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2).
    NP_001189827.1
    • chromatin-remodeling protein 11 (CHR11); FUNCTIONS IN: in 7 functions; INVOLVED IN: cell growth, embryo sac development; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2).
    NP_187291.2
    • chromatin-remodeling protein 11 (CHR11); FUNCTIONS IN: in 7 functions; INVOLVED IN: cell growth, embryo sac development; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 27406 Blast hits to 21426 proteins in 2299 species: Archae - 146; Bacteria - 6219; Metazoa - 6758; Fungi - 5167; Plants - 1971; Viruses - 469; Other Eukaryotes - 6676 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1940907..1946980
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202898.2 → NP_001189827.1  chromatin-remodeling protein 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189827.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JAW0, F4JAW1, Q8RWY3, Q9SQU3
      UniProtKB/TrEMBL
      A0A178VF59, A0A5S9X9M5, A0A654F4L8
      Conserved Domains (1) summary
      PLN03142
      Location:33 → 1051
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

    2. NM_111515.5 → NP_187291.2  chromatin-remodeling protein 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187291.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGV3, A0A654F4L8
      Conserved Domains (1) summary
      PLN03142
      Location:33 → 1050
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

    3. NM_001202897.1 → NP_001189826.1  chromatin-remodeling protein 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189826.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F4L8, F4JAV9
      Conserved Domains (6) summary
      PLN03142
      Location:33 → 1052
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd00046
      Location:209 → 348
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd00167
      Location:845 → 889
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam00271
      Location:505 → 604
      Helicase_C; Helicase conserved C-terminal domain
      pfam09110
      Location:756 → 827
      HAND; HAND
      pfam09111
      Location:899 → 1008
      SLIDE; SLIDE
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RWY3.4

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