U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    GPI transamidase component Gpi16 subunit family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819900, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    GPI transamidase component Gpi16 subunit family protein
    Primary source
    TAIR:AT3G07140
    Locus tag
    AT3G07140
    See related
    Araport:AT3G07140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (2261104..2264064)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein Neighboring gene purple acid phosphatase 15 Neighboring gene amino acid-ligase Neighboring gene glucan synthase-like 10 Neighboring gene Sterile alpha motif (SAM) domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_111594.4
    NM_180199.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in attachment of GPI anchor to protein IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of GPI-anchor transamidase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    GPI transamidase component Gpi16 subunit family protein
    NP_566299.1
    • GPI transamidase component Gpi16 subunit family protein; FUNCTIONS IN: GPI-anchor transamidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gpi16 subunit, GPI transamidase component (InterPro:IPR007245); Has 383 Blast hits to 363 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 131; Plants - 68; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
    NP_850530.1
    • GPI transamidase component Gpi16 subunit family protein; FUNCTIONS IN: GPI-anchor transamidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gpi16 subunit, GPI transamidase component (InterPro:IPR007245); Has 383 Blast hits to 363 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 131; Plants - 68; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2261104..2264064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111594.4 → NP_566299.1  GPI transamidase component Gpi16 subunit family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566299.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJE1, A0A384K908, Q949U5, Q9SFU4
      Conserved Domains (1) summary
      pfam04113
      Location:16 → 588
      Gpi16; Gpi16 subunit, GPI transamidase component

    2. NM_180199.2 → NP_850530.1  GPI transamidase component Gpi16 subunit family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850530.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VHF2, A0A384L9F2, F4JDA1, Q9SFU4
      Conserved Domains (1) summary
      pfam04113
      Location:16 → 589
      Gpi16; Gpi16 subunit, GPI transamidase component
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools