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    TRZ4 tRNAse Z4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820872, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRZ4
    Official Full Name
    tRNAse Z4
    Primary source
    TAIR:AT3G16260
    Locus tag
    AT3G16260
    See related
    Araport:AT3G16260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    tRNAse Z4
    Summary
    Encodes a tRNase Z.
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    Genomic context

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    See TRZ4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (5509344..5513245)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene delta tonoplast integral protein Neighboring gene ncRNA Neighboring gene NDH-dependent cyclic electron flow 1 Neighboring gene ncRNA Neighboring gene ENTH/VHS family protein Neighboring gene Integrase-type DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis encodes four tRNase Z enzymes. Canino G, et al. Plant Physiol, 2009 Jul. PMID 19411372, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_112497.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 3'-tRNA processing endoribonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables 3'-tRNA processing endoribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within tRNA 3'-end processing IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tRNAse Z4
    NP_188247.2
    • tRNAse Z4 (TRZ4); FUNCTIONS IN: 3'-tRNA processing endoribonuclease activity, catalytic activity; INVOLVED IN: tRNA 3'-end processing, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease Z (InterPro:IPR013471); BEST Arabidopsis thaliana protein match is: tRNAse Z3 (TAIR:AT1G52160.1); Has 6299 Blast hits to 4396 proteins in 1654 species: Archae - 442; Bacteria - 4351; Metazoa - 254; Fungi - 243; Plants - 108; Viruses - 0; Other Eukaryotes - 901 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5509344..5513245
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338224.1 → NP_001327484.1  tRNAse Z4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSG7, A0A7G2EIP9

    2. NM_001338223.1 → NP_001327485.1  tRNAse Z4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSG8, A0A7G2EIP9

    3. NM_112497.3 → NP_188247.2  tRNAse Z4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188247.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J1H7, Q8GYZ2, Q8LBW8, Q9LU20
      UniProtKB/TrEMBL
      A0A178V7J3, A0A7G2EIP9
      Conserved Domains (5) summary
      COG1234
      Location:130 → 358
      ElaC; Ribonuclease BN, tRNA processing enzyme [Translation, ribosomal structure and biogenesis]
      cd07718
      Location:576 → 829
      RNaseZ_ELAC1_ELAC2-C-term-like_MBL-fold; Ribonuclease Z ELAC1, C-terminus of ELAC2, and related proteins; MBL-fold metallo-hydrolase domain
      pfam13691
      Location:132 → 188
      Lactamase_B_4; tRNase Z endonuclease
      cl00716
      Location:308 → 349
      tRNA_deacylase; D-aminoacyl-tRNA deacylase
      cl23716
      Location:796 → 866
      metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4J1H7.1

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