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    BTB/POZ domain protein, putative (DUF177) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821518, updated on 18-Sep-2024

    Summary

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    Official Full Name
    BTB/POZ domain protein, putative (DUF177)
    Primary source
    TAIR:AT3G19810
    Locus tag
    AT3G19810
    See related
    Araport:AT3G19810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (6877575..6879543, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene E3 ubiquitin-protein ligase, putative (DUF177) Neighboring gene cell elongation protein / DWARF1 / DIMINUTO (DIM) Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene ncRNA Neighboring gene pre-mRNA-processing protein 40C

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Essential role of conserved DUF177A protein in plastid 23S rRNA accumulation and plant embryogenesis. Yang J, et al. J Exp Bot, 2016 Oct. PMID 27574185, Free PMC Article
    2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001338419.1
    NM_112871.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within rRNA processing ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    BTB/POZ domain protein, putative (DUF177)
    NP_566649.1
    • Protein of unknown function (DUF177); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF177 (InterPro:IPR003772); Has 677 Blast hits to 677 proteins in 297 species: Archae - 0; Bacteria - 566; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6877575..6879543 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112871.4 → NP_566649.1  BTB/POZ domain protein, putative (DUF177) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566649.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LT27
      UniProtKB/TrEMBL
      A0A5S9XEC4, A0A654F8V2
      Conserved Domains (1) summary
      pfam02620
      Location:171 → 310
      DUF177; Uncharacterized ACR, COG1399

    2. NM_001338419.1 → NP_001327235.1  BTB/POZ domain protein, putative (DUF177) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LT27
      UniProtKB/TrEMBL
      A0A5S9XEC4, A0A654F8V2
      Conserved Domains (1) summary
      pfam02620
      Location:171 → 310
      DUF177; Uncharacterized ACR, COG1399
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LT27.1

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