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    Pseudouridine synthase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824391, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pseudouridine synthase family protein
    Primary source
    TAIR:AT3G52260
    Locus tag
    AT3G52260
    See related
    Araport:AT3G52260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (19383266..19386553, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene leukocyte immunoglobulin-like receptor family A protein Neighboring gene uncharacterized protein Neighboring gene transcriptional regulator ATRX Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene Transcription initiation factor IIF, beta subunit Neighboring gene general transcription factor group E6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203142.1
    NM_001339566.1
    NM_115086.3
    NM_202687.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pseudouridine synthase family protein
    NP_001190071.1
    • Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity, RNA binding; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT5G51140.1).
    NP_190794.2
    • Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity, RNA binding; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT5G51140.1); Has 17575 Blast hits to 17575 proteins in 2702 species: Archae - 12; Bacteria - 13701; Metazoa - 198; Fungi - 201; Plants - 200; Viruses - 0; Other Eukaryotes - 3263 (source: NCBI BLink).
    NP_974416.1
    • Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity, RNA binding; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RluC/RluD (InterPro:IPR006225), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT5G51140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19383266..19386553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202687.3 → NP_974416.1  Pseudouridine synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974416.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5M721, Q8VYW0, Q9FT56
      UniProtKB/TrEMBL
      A0A5S9XKV0, A0A654FF35, A0A7G2ET65
      Conserved Domains (1) summary
      TIGR00005
      Location:52 → 369
      rluA_subfam; pseudouridine synthase, RluA family

    2. NM_115086.3 → NP_190794.2  Pseudouridine synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190794.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFD6
      Conserved Domains (2) summary
      cd02869
      Location:106 → 289
      PseudoU_synth_RluCD_like; Pseudouridine synthase, RsuA/RluD family
      cd00165
      Location:54 → 110
      S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...

    3. NM_001203142.1 → NP_001190071.1  Pseudouridine synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190071.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2ET65, F4J6V3
      Conserved Domains (1) summary
      TIGR00005
      Location:91 → 416
      rluA_subfam; pseudouridine synthase, RluA family

    4. NM_001339566.1 → NP_001326754.1  Pseudouridine synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VD45, A0A178VFD6, A0A1I9LQ88, A0A384KZL4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5M721.2

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