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    SNC4 suppressor of npr1-1 constitutive 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843016, updated on 18-Sep-2024

    Summary

    Official Symbol
    SNC4
    Official Full Name
    suppressor of npr1-1 constitutive 4
    Primary source
    TAIR:AT1G66980
    Locus tag
    AT1G66980
    See related
    Araport:AT1G66980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1O19.6; F1O19_6; GDPDL2; Glycerophosphodiester phosphodiesterase (GDPD) like 2; suppressor of npr1-1 constitutive 4
    Summary
    Encodes SNC4 (suppressor of npr1-1, constitutive 4), an atypical receptor-like kinase with two predicted extracellular glycerophosphoryl diester phosphodiesterase domains.
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    Genomic context

    See SNC4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (24997223..25002239, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Terpenoid cyclases family protein Neighboring gene SHV3-like 2 Neighboring gene miscRNA Neighboring gene Protein kinase superfamily protein

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001334263.1
    NM_001334264.1
    NM_105369.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycerophosphodiester phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in cellular defense response IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within defense response IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
     
    located_in mitochondrion HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    suppressor of npr1-1 constitutive 4
    NP_176870.2
    • suppressor of npr1-1 constitutive 4 (SNC4); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Protein kinase, catalytic domain (InterPro:IPR000719), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: SHV3-like 2 (TAIR:AT1G66970.1); Has 115599 Blast hits to 113492 proteins in 4573 species: Archae - 153; Bacteria - 13353; Metazoa - 42961; Fungi - 9619; Plants - 32809; Viruses - 285; Other Eukaryotes - 16419 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24997223..25002239 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334265.1NP_001323205.1  suppressor of npr1-1 constitutive 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWC0, A0A5S9WSD5
    2. NM_105369.3NP_176870.2  suppressor of npr1-1 constitutive 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176870.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D7SFH9, Q9FZI0
      UniProtKB/TrEMBL
      A0A5S9WSD5
      Conserved Domains (6) summary
      cd08603
      Location:51352
      GDPD_SHV3_repeat_1; Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins
      cd08604
      Location:369669
      GDPD_SHV3_repeat_2; Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins
      smart00219
      Location:8061079
      TyrKc; Tyrosine kinase, catalytic domain
      COG0584
      Location:51351
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
      cd14066
      Location:8111081
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam03009
      Location:375663
      GDPD; Glycerophosphoryl diester phosphodiesterase family
    3. NM_001334264.1NP_001323204.1  suppressor of npr1-1 constitutive 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWH4, A0A5S9WSD5
    4. NM_001334263.1NP_001323206.1  suppressor of npr1-1 constitutive 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWB8, A0A5S9WSD5