U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Phenazine biosynthesis PhzC/PhzF protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828159, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Phenazine biosynthesis PhzC/PhzF protein
    Primary source
    TAIR:AT4G02860
    Locus tag
    AT4G02860
    See related
    Araport:AT4G02860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5J8.18; T5J8_18
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (1268618..1270539, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene phenazine biosynthesis PhzC/PhzF family protein Neighboring gene B3 domain protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_116520.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Phenazine biosynthesis PhzC/PhzF protein
    NP_192195.2
    • Phenazine biosynthesis PhzC/PhzF protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719); BEST Arabidopsis thaliana protein match is: Phenazine biosynthesis PhzC/PhzF protein (TAIR:AT1G03210.1); Has 4066 Blast hits to 4061 proteins in 1265 species: Archae - 50; Bacteria - 3051; Metazoa - 120; Fungi - 130; Plants - 90; Viruses - 0; Other Eukaryotes - 625 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1268618..1270539 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116520.4 → NP_192195.2  Phenazine biosynthesis PhzC/PhzF protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192195.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5V6, F4JHW1
      Conserved Domains (1) summary
      pfam02567
      Location:31 → 309
      PhzC-PhzF; Phenazine biosynthesis-like protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools