U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    VPS28-2 Vacuolar protein sorting-associated protein VPS28 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825842, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    VPS28-2
    Official Full Name
    Vacuolar protein sorting-associated protein VPS28 family protein
    Primary source
    TAIR:AT4G05000
    Locus tag
    AT4G05000
    See related
    Araport:AT4G05000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    C17L7.5; vacuolar protein sorting-associated protein 28 homolog 1; VPS28-1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See VPS28-2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (2563040..2564835)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene serine/arginine repetitive matrix-like protein (DUF761) Neighboring gene F-box family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Arabidopsis ESCRT protein-protein interaction network. Shahriari M, et al. Plant Mol Biol, 2011 May. PMID 21442383
    2. The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. Spitzer C, et al. Development, 2006 Dec. PMID 17090720
    3. Protein-Protein Interaction Network and Subcellular Localization of the Arabidopsis Thaliana ESCRT Machinery. Richardson LG, et al. Front Plant Sci, 2011. PMID 22639582, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001340525.1
    NM_116739.4
    NM_202784.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endosome transport via multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ESCRT I complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Vacuolar protein sorting-associated protein VPS28 family protein
    NP_567281.2
    • VPS28-2; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 28 homolog 1 (TAIR:AT4G21560.3); Has 389 Blast hits to 388 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 146; Plants - 72; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
    NP_974513.1
    • vacuolar protein sorting-associated protein 28 homolog 1 (VPS28-1); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 28 homolog 1 (TAIR:AT4G21560.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      2563040..2564835
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202784.3 → NP_974513.1  Vacuolar protein sorting-associated protein VPS28 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974513.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6DBF1, Q9S9T7
      UniProtKB/TrEMBL
      A0A178V397, A0A5S9XQ31, A0A654FLU4
      Conserved Domains (1) summary
      pfam03997
      Location:19 → 205
      VPS28; VPS28 protein

    2. NM_116739.4 → NP_567281.2  Vacuolar protein sorting-associated protein VPS28 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567281.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6DBF1, Q9S9T7
      UniProtKB/TrEMBL
      A0A178V397, A0A5S9XQ31, A0A654FLU4
      Conserved Domains (1) summary
      pfam03997
      Location:19 → 205
      VPS28; VPS28 protein

    3. NM_001340525.1 → NP_001328317.1  Vacuolar protein sorting-associated protein VPS28 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6DBF1, Q9S9T7
      UniProtKB/TrEMBL
      A0A178V397, A0A5S9XQ31, A0A654FLU4
      Conserved Domains (1) summary
      pfam03997
      Location:19 → 205
      VPS28; VPS28 protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S9T7.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools