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    PLDGAMMA3 phospholipase D gamma 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826790, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PLDGAMMA3
    Official Full Name
    phospholipase D gamma 3
    Primary source
    TAIR:AT4G11840
    Locus tag
    AT4G11840
    See related
    Araport:AT4G11840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    phospholipase D gamma 3; T26M18.50; T26M18_50
    Summary
    member of C2-PLD subfamily
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    Genomic context

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    See PLDGAMMA3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (7121965..7126317, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase Neighboring gene phospholipase D gamma 2 Neighboring gene Interleukin-1 receptor-associated kinase 4 protein Neighboring gene phospholipase D gamma 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_117254.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables N-acylphosphatidylethanolamine-specific phospholipase D activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipase D activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipase D activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in phosphatidylcholine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    phospholipase D gamma 3
    NP_192921.1
    • phospholipase D gamma 3 (PLDGAMMA3); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D gamma 2 (TAIR:AT4G11830.2); Has 2125 Blast hits to 1669 proteins in 399 species: Archae - 2; Bacteria - 519; Metazoa - 437; Fungi - 453; Plants - 551; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7121965..7126317 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340738.1 → NP_001329644.1  phospholipase D gamma 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B8B3, A0A5S9XRG3, A0A654FNA0, A0A7G2F1Q7

    2. NM_117254.3 → NP_192921.1  phospholipase D gamma 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192921.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9T052
      UniProtKB/TrEMBL
      A0A5S9XRG3, A0A654FNA0, A0A7G2F1Q7
      Conserved Domains (4) summary
      cd04015
      Location:43 → 193
      C2_plant_PLD; C2 domain present in plant phospholipase D (PLD)
      PLN03008
      Location:41 → 856
      PLN03008; Phospholipase D delta
      pfam12357
      Location:789 → 857
      PLD_C; Phospholipase D C terminal
      cl15239
      Location:544 → 762
      PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9T052.1

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