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    F-box associated ubiquitination effector family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826920, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box associated ubiquitination effector family protein
    Primary source
    TAIR:AT4G13060
    Locus tag
    AT4G13060
    See related
    Araport:AT4G13060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25G13.150; F25G13_150
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (7619935..7621083, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene Acyl-ACP thioesterase Neighboring gene RNA-binding CRS1 / YhbY (CRM) domain protein Neighboring gene RALF-like 30

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box associated ubiquitination effector family protein
    NP_193042.1
    • F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT4G21240.1); Has 781 Blast hits to 759 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 781; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7619935..7621083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117375.2 → NP_193042.1  F-box associated ubiquitination effector family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193042.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XS29, Q9SV63
      Conserved Domains (2) summary
      TIGR01640
      Location:46 → 291
      F_box_assoc_1; F-box protein interaction domain
      pfam08268
      Location:140 → 285
      FBA_3; F-box associated domain
    Nucleotide Protein
    Heading Accession and Version

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