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    CTP synthase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827780, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CTP synthase family protein
    Primary source
    TAIR:AT4G20320
    Locus tag
    AT4G20320
    See related
    Araport:AT4G20320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1C12.230; F1C12_230
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    23
    Sequence:
    Chromosome: 4; NC_003075.7 (10974456..10979627)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Serine/Threonine-kinase, putative (DUF1639) Neighboring gene Peptidase M50 family protein Neighboring gene ribonuclease H2 subunit B Neighboring gene Transcription initiation factor TFIIE, beta subunit Neighboring gene Transcription factor TFIIE, alpha subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of filament-forming CTP synthases from Arabidopsis thaliana. Daumann M, et al. Plant J, 2018 Oct. PMID 30030857, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084942.6
    NM_001341419.1
    NM_001341420.1
    NM_001341421.1
    NM_001341422.1
    NM_001341423.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables CTP synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in 'de novo' CTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoophidium IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CTP synthase family protein
    NP_001078411.1
    • CTP synthase family protein; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine nucleotide biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT1G30820.1); Has 10893 Blast hits to 10859 proteins in 2946 species: Archae - 237; Bacteria - 5540; Metazoa - 255; Fungi - 235; Plants - 169; Viruses - 0; Other Eukaryotes - 4457 (source: NCBI BLink).
    NP_001320008.1
    • CTP synthase family protein; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT1G30820.1); Has 10893 Blast hits to 10859 proteins in 2946 species: Archae - 237; Bacteria - 5540; Metazoa - 255; Fungi - 235; Plants - 169; Viruses - 0; Other Eukaryotes - 4457 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10974456..10979627
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084942.6 → NP_001078411.1  CTP synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078411.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FR47, Q0WRY1
      Conserved Domains (3) summary
      cd01746
      Location:298 → 543
      GATase1_CTP_Synthase; Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase
      PLN02327
      Location:1 → 557
      PLN02327; CTP synthase
      pfam06418
      Location:14 → 272
      CTP_synth_N; CTP synthase N-terminus

    2. NM_001341421.1 → NP_001329931.1  CTP synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FR47, Q0WRY1

    3. NM_001341420.1 → NP_001329929.1  CTP synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B985, A0A7G2EZK8

    4. NM_001341419.1 → NP_001320008.1  CTP synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FR47, Q0WRY1

    5. NM_001341422.1 → NP_001329932.1  CTP synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FR47, Q0WRY1

    6. NM_001341423.1 → NP_001329930.1  CTP synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FR47, Q0WRY1
    Nucleotide Protein
    Heading Accession and Version

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